Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sspISmall acid-soluble spore protein SspI; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the SspI family. (69 aa)    
Predicted Functional Partners:
BAMA_01730
Spore gernimation protein GerQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
BAMA_07760
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.769
BAMA_11310
Spore gernimation protein GerD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.769
BAMA_08220
Spore coat protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.768
BAMA_06320
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.767
BAMA_22645
Stage III sporulation protein AH; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.764
BAMA_01705
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.762
BAMA_21655
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.758
BAMA_01725
Cell wall hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.756
BAMA_14000
ATP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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