BAMA_03125 protein (Bacillus manliponensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BAMA_03125

Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)

Predicted Functional Partners:

BAMA_03120

0.998

BAMA_03115

0.994

BAMA_06880

0.986

BAMA_06875

0.956

BAMA_09425

0.927

BAMA_03130

0.917

BAMA_09445

0.917

BAMA_06870

0.879

BAMA_09420

0.873

BAMA_17990

0.797

Your Current Organism:

Bacillus manliponensis

NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 5

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
BAMA_03115	BAMA_03120	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
BAMA_03115	BAMA_03125	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
BAMA_03115	BAMA_03130	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.963
BAMA_03115	BAMA_06870	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.962
BAMA_03115	BAMA_06875	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
BAMA_03115	BAMA_09420	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinogalactan ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
BAMA_03115	BAMA_09425	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinogalactan ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.966
BAMA_03115	BAMA_09445	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.963
BAMA_03115	BAMA_17990	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
BAMA_03120	BAMA_03115	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
BAMA_03120	BAMA_03125	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
BAMA_03120	BAMA_03130	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.952
BAMA_03120	BAMA_06870	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.950
BAMA_03120	BAMA_06880	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.974
BAMA_03120	BAMA_09420	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arabinogalactan ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.989
BAMA_03120	BAMA_09445	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.952
BAMA_03125	BAMA_03115	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
BAMA_03125	BAMA_03120	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998
BAMA_03125	BAMA_03130	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.917
BAMA_03125	BAMA_06870	Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Glycerol-3-phosphate ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.	0.879