STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_03250Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (80 aa)    
Predicted Functional Partners:
BAMA_03245
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.938
BAMA_18395
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.721
BAMA_08240
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.682
BAMA_17820
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.619
BAMA_18095
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.604
BAMA_13120
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.483
BAMA_03240
3-ketoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.441
BAMA_21385
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.416
BAMA_20110
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.412
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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