STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_03320Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)    
Predicted Functional Partners:
BAMA_04035
Virulence factor MviM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.742
BAMA_03940
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.740
BAMA_03935
Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.684
lysS
lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.632
BAMA_02940
SMP-30/gluconolaconase/LRE domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.590
BAMA_23425
Ribonuclease BN; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0761 family.
  
    0.527
BAMA_23450
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.523
BAMA_00215
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
    0.503
BAMA_19605
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Dps family.
   
    0.503
BAMA_20935
DeoR faimly transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.484
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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