STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_03355PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
BAMA_02420
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.886
BAMA_00130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.880
BAMA_13795
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.879
BAMA_05795
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.862
BAMA_18050
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.861
BAMA_04110
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.858
BAMA_18975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.856
BAMA_07470
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.847
BAMA_18995
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.838
BAMA_08110
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.837
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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