Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_04020Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (416 aa)    
Predicted Functional Partners:
BAMA_08115
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.664
BAMA_20805
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.662
BAMA_06585
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.658
BAMA_20365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
BAMA_10755
Macrolide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.583
BAMA_00680
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.572
BAMA_06975
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
BAMA_17070
MTA/SAH nucleosidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
BAMA_03740
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.478
BAMA_04015
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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