Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAMA_04530Ornithine cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (340 aa)    
Predicted Functional Partners:
BAMA_19475
IucA/IucC family siderophore biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.759
BAMA_08240
2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.716
BAMA_02375
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.711
BAMA_21195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the proline racemase family.
 
  
 0.669
BAMA_00630
Pyridoxal-5'-phosphate-dependent protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.654
BAMA_00625
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.647
BAMA_21200
Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.549
BAMA_04500
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.532
BAMA_04535
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.500
BAMA_12190
Cysteine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cysteine synthase/cystathionine beta- synthase family.
  
 
 0.492
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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