STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_05795Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (453 aa)    
Predicted Functional Partners:
BAMA_05790
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.996
BAMA_05800
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.939
BAMA_11870
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.905
BAMA_11055
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.898
BAMA_19050
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.896
BAMA_04115
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.863
BAMA_08105
Heme response regulator HssR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.863
BAMA_03355
PhoB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.862
BAMA_12755
PhoP family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.860
BAMA_18045
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.857
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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