Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_06930Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)    
Predicted Functional Partners:
BAMA_06925
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.984
fdhD
Formate dehydrogenase; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
   
 0.841
BAMA_24125
CotJA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.578
BAMA_07230
Quinol oxidase subunit 4; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.565
BAMA_17605
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.495
BAMA_01105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
BAMA_03545
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.432
BAMA_20785
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.422
BAMA_06745
Sulfurtransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0176 family.
  
     0.416
BAMA_00700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.411
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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