Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_06960Cadmium transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (785 aa)    
Predicted Functional Partners:
BAMA_10650
Superoxide dismutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.957
BAMA_06955
ArsR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.909
BAMA_15235
Copper resistance protein CopZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.818
BAMA_18365
Copper resistance protein CopZ; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.818
BAMA_18650
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.720
BAMA_16535
ATPase P; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
0.719
BAMA_18510
Beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.707
BAMA_14975
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.699
BAMA_19035
Copper oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.670
BAMA_02210
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.659
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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