Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_07280Spore gernimation protein GerLC; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
BAMA_07275
Spore gernimation protein GerLB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.968
BAMA_07270
Spore gernimation protein GerLA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.962
BAMA_05430
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.748
BAMA_23950
Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.747
BAMA_09690
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.693
BAMA_10225
Peptidase S55; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.649
BAMA_22630
Stage III sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
BAMA_13445
Spore protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.625
BAMA_01455
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.617
BAMA_09010
Sporulation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.602
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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