Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_07655LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)    
Predicted Functional Partners:
BAMA_07650
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.994
BAMA_01575
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.942
BAMA_12815
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.931
BAMA_01825
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.930
BAMA_06050
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.930
BAMA_13685
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.892
BAMA_07665
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.836
BAMA_07670
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.794
BAMA_14640
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.754
BAMA_07660
Antibiotic ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.735
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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