STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_07945Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (411 aa)    
Predicted Functional Partners:
BAMA_07940
Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.782
BAMA_09020
DNA methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.539
BAMA_06085
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.537
BAMA_16570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.536
BAMA_20840
Serine/threonine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.466
BAMA_14975
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
BAMA_14980
Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.463
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
     
  0.425
BAMA_18100
Cystathionine beta-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.412
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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