STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_08020Butanol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)    
Predicted Functional Partners:
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
    0.855
mgsA
Methylglyoxal synthase; Catalyzes the formation of methylglyoxal from dihydroxyacetone phosphate.
  
 
 0.735
BAMA_07545
Glyoxal reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.713
BAMA_09865
Glyoxal reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.713
BAMA_19235
Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
0.638
BAMA_08025
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.618
BAMA_09860
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.483
BAMA_05920
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.477
BAMA_08030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.451
rplJ
50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
    0.449
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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