STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_08105Heme response regulator HssR; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)    
Predicted Functional Partners:
BAMA_08110
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.979
BAMA_02420
Alkaline phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.875
BAMA_00130
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.874
BAMA_05795
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.863
BAMA_18050
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.852
BAMA_18975
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.851
BAMA_07470
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.842
BAMA_13865
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.835
BAMA_18995
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.834
BAMA_13795
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  0.833
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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