STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_09055Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)    
Predicted Functional Partners:
BAMA_09050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.719
BAMA_23765
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.718
BAMA_09045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.710
BAMA_09035
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0342 family.
 
     0.624
BAMA_23980
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.623
BAMA_09060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.610
BAMA_16570
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.574
BAMA_22545
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.551
BAMA_19445
Branched-chain amino acid ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
    
   0.525
BAMA_24310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
   0.525
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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