Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_09110Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0358 family. (95 aa)    
Predicted Functional Partners:
BAMA_09035
Regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0342 family.
 
     0.802
BAMA_08225
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0342 family.
  
     0.733
BAMA_09115
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.681
BAMA_09835
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
  
    0.646
BAMA_01660
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.590
BAMA_10915
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.538
BAMA_13890
Ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.505
BAMA_05155
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0354 family.
  
     0.498
BAMA_11110
Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
BAMA_05090
General stress protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.481
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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