Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAMA_09730Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (508 aa)    
Predicted Functional Partners:
BAMA_09725
Methylenetetrahydrofolate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
BAMA_09715
Stage V sporulation protein AB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.521
BAMA_09720
Stage V sporulation protein AA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.469
BAMA_09710
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.452
BAMA_09735
Sporulation sigma factor SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
       0.441
BAMA_09690
Stage V sporulation protein AF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
BAMA_09695
Stage V sporulation protein AE; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
BAMA_09700
Stage V sporulation protein AEB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
BAMA_09705
Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.436
spoIIAB
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
       0.433
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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