Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_12440Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
BAMA_12435
Replication protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.856
BAMA_12445
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
BAMA_12450
AbrB family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.763
BAMA_12455
Cell division protein SepF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.718
BAMA_12720
DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
 
 0.672
BAMA_18420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.672
BAMA_12415
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.654
BAMA_12425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.529
BAMA_12430
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.529
BAMA_12420
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.519
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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