STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_13680Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)    
Predicted Functional Partners:
BAMA_13685
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.998
BAMA_13690
LuxR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
BAMA_18960
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.921
BAMA_13675
Phage-shock protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.886
BAMA_13670
Flagellar basal body rod protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.734
BAMA_02310
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.725
BAMA_01825
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.549
BAMA_09030
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.548
BAMA_06050
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.528
BAMA_22040
Coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
  
     0.488
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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