Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
BAMA_13985Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (64 aa)    
Predicted Functional Partners:
BAMA_13980
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.959
BAMA_13975
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.819
BAMA_17195
Spore gernimation protein GerPC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.738
BAMA_23930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.736
BAMA_14005
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.715
BAMA_05240
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.704
BAMA_10920
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
BAMA_17200
Spore gernimation protein GerPB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.653
BAMA_17205
Spore gernimation protein GerPA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
engA
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.621
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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