STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_15445ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)    
Predicted Functional Partners:
BAMA_15455
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.864
BAMA_15450
Clp protease ClpP; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase S14 family.
  
    0.789
BAMA_15465
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.741
BAMA_15460
Terminase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.709
BAMA_15440
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.644
BAMA_17790
Pectin lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.631
BAMA_22555
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.552
BAMA_15470
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.500
BAMA_12570
Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.427
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
      
 0.412
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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