Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
BAMA_16375Glycosyl transferase family 8; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)    
Predicted Functional Partners:
BAMA_16380
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.977
BAMA_16370
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.865
BAMA_19430
Branched-chain amino acid ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
0.732
BAMA_16365
PadR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.673
BAMA_06580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.591
BAMA_01685
Iron ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.578
BAMA_06480
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.558
BAMA_13300
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.505
BAMA_17615
Abortive infection protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.422
BAMA_01770
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.411
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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