Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_16680Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (284 aa)    
Predicted Functional Partners:
BAMA_16685
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
BAMA_06805
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.812
BAMA_13300
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.791
BAMA_09755
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.697
BAMA_09765
Acetoin ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.696
BAMA_09760
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.637
BAMA_16670
RNA polymerase sigma factor; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
       0.440
BAMA_16675
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.440
BAMA_06580
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   0.434
BAMA_06480
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.431
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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