Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_17840Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)    
Predicted Functional Partners:
BAMA_17835
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.959
BAMA_17825
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
BAMA_17845
Renal dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
BAMA_17850
Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.794
BAMA_17735
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
BAMA_17750
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.691
BAMA_17730
Beta-glycosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
BAMA_17830
Recombinase RecA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.614
BAMA_14830
D-alanyl-D-alanine carboxypeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.582
BAMA_17770
Glycosyl transferase family 1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.572
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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