Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
BAMA_17845Renal dipeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)    
Predicted Functional Partners:
BAMA_17850
Multidrug ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.953
BAMA_17795
Sugar transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.886
BAMA_17705
Tyrosine protein kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.856
BAMA_17715
Polysaccharide biosynthesis protein EpsC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.848
BAMA_17835
Aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
BAMA_17840
Metallophosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.828
BAMA_11315
Chromosome partitioning protein ParA; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 0.815
BAMA_17825
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.810
BAMA_17750
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.808
BAMA_17735
Capsular biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.791
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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