STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_21670Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (403 aa)    
Predicted Functional Partners:
BAMA_19090
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  0.880
BAMA_01850
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.869
BAMA_21665
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.857
BAMA_07155
D-ribose transporter subunit RbsB; Periplasmic substrate-binding component of the ATP-dependent ribose transport system; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
BAMA_20350
Autoinducer 2-binding protein lsrB; With lsrACD is involved in the transport of autoinducer 2 into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
BAMA_23890
LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.663
BAMA_06845
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.658
BAMA_14640
Chemotaxis protein CheV; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.563
BAMA_10425
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.546
BAMA_20820
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
     
 0.522
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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