STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_21990Competence protein; May be involved in regulation of competence genes; Derived by automated computational analysis using gene prediction method: Protein Homology. (275 aa)    
Predicted Functional Partners:
BAMA_03190
2OG-Fe(II) oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.801
BAMA_00030
Proline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.781
BAMA_21195
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the proline racemase family.
    
 0.723
BAMA_21200
Proline racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.723
BAMA_23655
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.719
BAMA_05055
Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.706
BAMA_05565
Amino acid racemase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.706
BAMA_05865
Aspartate racemase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/glutamate racemases family.
     
  0.706
BAMA_21995
Competence protein ComE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.694
BAMA_22000
Competence protein ComE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.644
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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