STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BAMA_21995Competence protein ComE; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)    
Predicted Functional Partners:
BAMA_22430
Competence protein ComG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.924
BAMA_22425
Competence protein ComG; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.922
BAMA_00875
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.919
BAMA_22005
Competence protein ComEC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.916
BAMA_22000
Competence protein ComE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.902
BAMA_22435
Competence protein ComG; Required for transformation and DNA binding.
   
  
 0.895
BAMA_18075
Peptidase A24; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.894
BAMA_17420
Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.767
BAMA_00870
Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.751
BAMA_21990
Competence protein; May be involved in regulation of competence genes; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.694
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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