Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
BAMA_23950Spore gernimation protein GerA; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)    
Predicted Functional Partners:
BAMA_23945
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.977
BAMA_23940
Spore gernimation protein GerB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.959
BAMA_05440
Spore gernimation protein GerH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.821
BAMA_09705
Stage V sporulation protein AD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.802
BAMA_09710
Stage V sporulation protein AC; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.788
BAMA_09700
Stage V sporulation protein AEB; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.784
gpr
Peptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.778
BAMA_05435
Spore gernimation protein GerH; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.776
BAMA_01455
Stage II sporulation protein R; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.774
BAMA_10225
Peptidase S55; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.771
Your Current Organism:
Bacillus manliponensis
NCBI taxonomy Id: 574376
Other names: B. manliponensis, Bacillus sp. BL4-6, JCM 15802, KCTC 13319, strain BL4-6
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