STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0YRJ9_COCSCP-loop containing nucleoside triphosphate hydrolase protein; Belongs to the DEAD box helicase family. (460 aa)    
Predicted Functional Partners:
I0Z9S2_COCSC
RNA-binding domain-containing protein.
   
 
 0.960
I0YNX6_COCSC
Eukaryotic rRNA processing.
   
 0.926
I0YM22_COCSC
WD40 repeat-like protein.
   
 
 0.925
I0ZA68_COCSC
Nop14-like protein.
   
 0.925
I0YM45_COCSC
Ribosome biogenesis protein BOP1 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat BOP1/ERB1 family.
   
 0.918
I0Z5H2_COCSC
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 0.911
I0Z0R9_COCSC
DEAD-domain-containing protein.
  
 
0.905
I0Z3T2_COCSC
ARM repeat-containing protein.
   
 
 0.904
I0Z6X9_COCSC
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
  0.893
I0Z275_COCSC
RWP-RK domain-containing protein.
   
 
 0.886
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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