STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0YWN7_COCSCP-loop containing nucleoside triphosphate hydrolase protein. (211 aa)    
Predicted Functional Partners:
I0YYG9_COCSC
SRP54-domain-containing protein.
   
 0.989
I0YLF3_COCSC
Signal recognition particle subunit SRP68; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP68 family.
   
 
 0.910
I0Z3X8_COCSC
Signal recognition particle subunit SRP72; Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane; Belongs to the SRP72 family.
    
 
 0.893
I0YLZ7_COCSC
Uncharacterized protein.
   
 
 0.886
I0Z3T9_COCSC
Signal recognition particle, SRP14 subunit.
   
 
 0.874
I0Z8A5_COCSC
Signal recognition particle, SRP9 subunit.
   
 
 0.816
I0YJE8_COCSC
Signal recognition particle protein.
   
 
 0.736
I0YZ72_COCSC
Signal recognition particle 54 kDa protein; Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein). Belongs to the GTP-binding SRP family. SRP54 subfamily.
   
 
 0.736
I0Z7I6_COCSC
Cell division transporter substrate-binding protein FtsY.
   
 
 0.736
I0Z5C6_COCSC
Ribos_L4_asso_C domain-containing protein.
    
 
 0.714
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.