STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0YXV3_COCSCTranscription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family. (115 aa)    
Predicted Functional Partners:
I0YJE2_COCSC
DNA-directed RNA polymerase II, 36 kDa polypeptide.
   
 0.993
I0YQK5_COCSC
Polymeras-like protein II polypeptide D.
   
 0.993
I0YRT6_COCSC
RNA polymerase II subunit B7.
   
 0.993
I0YSV9_COCSC
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
   
 0.992
I0YXI5_COCSC
DNA-directed RNA polymerase II, 23 kDa polypeptide.
   
 0.991
I0YIN6_COCSC
RBP11-like subunits of RNA polymerase.
   
 0.990
I0YUU8_COCSC
Uncharacterized protein.
   
 0.988
I0YXY4_COCSC
SPT16-domain-containing protein.
    
 0.987
I0YZ00_COCSC
RNA polymerase Rpb6.
   
 0.987
I0YLS2_COCSC
Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.
   
 0.986
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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