I0Z1V5_COCSC protein (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I0Z1V5_COCSC

DegP-type protease. (1018 aa)

Predicted Functional Partners:

I0YLH9_COCSC

0.622

I0Z062_COCSC

0.622

I0YRJ3_COCSC

0.495

I0Z970_COCSC

0.493

I0YVQ6_COCSC

0.485

I0YKN2_COCSC

0.483

I0YX10_COCSC

0.483

I0YMB2_COCSC

0.471

I0Z1W0_COCSC

0.470

I0Z7B4_COCSC

0.467

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YKN2_COCSC	I0YLH9_COCSC	I0YKN2	I0YLH9	Concanavalin A-like lectin/glucanase.	UBC-like protein.	0.436
I0YKN2_COCSC	I0YRJ3_COCSC	I0YKN2	I0YRJ3	Concanavalin A-like lectin/glucanase.	Trypsin-like serine protease.	0.473
I0YKN2_COCSC	I0YX10_COCSC	I0YKN2	I0YX10	Concanavalin A-like lectin/glucanase.	Uncharacterized protein.	0.701
I0YKN2_COCSC	I0Z062_COCSC	I0YKN2	I0Z062	Concanavalin A-like lectin/glucanase.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.436
I0YKN2_COCSC	I0Z1V5_COCSC	I0YKN2	I0Z1V5	Concanavalin A-like lectin/glucanase.	DegP-type protease.	0.483
I0YKN2_COCSC	I0Z1W0_COCSC	I0YKN2	I0Z1W0	Concanavalin A-like lectin/glucanase.	Trypsin-like serine protease.	0.473
I0YKN2_COCSC	I0Z970_COCSC	I0YKN2	I0Z970	Concanavalin A-like lectin/glucanase.	Trypsin-like serine protease.	0.473
I0YLH9_COCSC	I0YKN2_COCSC	I0YLH9	I0YKN2	UBC-like protein.	Concanavalin A-like lectin/glucanase.	0.436
I0YLH9_COCSC	I0YMB2_COCSC	I0YLH9	I0YMB2	UBC-like protein.	Putative 26S proteasome regulatory subunit.	0.651
I0YLH9_COCSC	I0YRJ3_COCSC	I0YLH9	I0YRJ3	UBC-like protein.	Trypsin-like serine protease.	0.703
I0YLH9_COCSC	I0YVQ6_COCSC	I0YLH9	I0YVQ6	UBC-like protein.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.668
I0YLH9_COCSC	I0YX10_COCSC	I0YLH9	I0YX10	UBC-like protein.	Uncharacterized protein.	0.436
I0YLH9_COCSC	I0Z062_COCSC	I0YLH9	I0Z062	UBC-like protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.834
I0YLH9_COCSC	I0Z1V5_COCSC	I0YLH9	I0Z1V5	UBC-like protein.	DegP-type protease.	0.622
I0YLH9_COCSC	I0Z1W0_COCSC	I0YLH9	I0Z1W0	UBC-like protein.	Trypsin-like serine protease.	0.703
I0YLH9_COCSC	I0Z970_COCSC	I0YLH9	I0Z970	UBC-like protein.	Trypsin-like serine protease.	0.703
I0YMB2_COCSC	I0YLH9_COCSC	I0YMB2	I0YLH9	Putative 26S proteasome regulatory subunit.	UBC-like protein.	0.651
I0YMB2_COCSC	I0YRJ3_COCSC	I0YMB2	I0YRJ3	Putative 26S proteasome regulatory subunit.	Trypsin-like serine protease.	0.471
I0YMB2_COCSC	I0YVQ6_COCSC	I0YMB2	I0YVQ6	Putative 26S proteasome regulatory subunit.	26S proteasome non-ATPase regulatory subunit 1 homolog; Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.	0.998
I0YMB2_COCSC	I0Z062_COCSC	I0YMB2	I0Z062	Putative 26S proteasome regulatory subunit.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.651