STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0Z2F0_COCSCSWIRM domain-containing protein. (595 aa)    
Predicted Functional Partners:
I0YJ45_COCSC
ARID-like protein.
    
  0.979
I0Z9L7_COCSC
ARID domain-containing protein.
    
  0.979
I0YV62_COCSC
Sec1-like protein; Belongs to the STXBP/unc-18/SEC1 family.
 
      0.849
I0Z7Z7_COCSC
Uncharacterized protein.
    
 0.599
I0YWR4_COCSC
Histone-fold-containing protein.
    
 0.476
I0YX30_COCSC
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.442
I0YXY2_COCSC
Hist_deacetyl domain-containing protein.
   
 0.442
I0ZAS6_COCSC
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.442
I0Z9L9_COCSC
CID domain-containing protein.
    
   0.434
I0YTA3_COCSC
Uncharacterized protein; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
    
 0.423
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.