I0Z2I5_COCSC protein (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I0Z2I5_COCSC

Uncharacterized protein. (453 aa)

Predicted Functional Partners:

I0YR41_COCSC

0.999

I0YV46_COCSC

0.999

I0YTG9_COCSC

0.998

I0Z8Q6_COCSC

0.998

I0YUU8_COCSC

0.997

I0YXI5_COCSC

0.997

I0YZ00_COCSC

0.997

I0YLS2_COCSC

0.996

I0ZAH5_COCSC

0.996

I0YQW0_COCSC

0.993

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YLS2_COCSC	I0YQW0_COCSC	I0YLS2	I0YQW0	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	RRN3-domain-containing protein.	0.962
I0YLS2_COCSC	I0YR41_COCSC	I0YLS2	I0YR41	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.996
I0YLS2_COCSC	I0YTG9_COCSC	I0YLS2	I0YTG9	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Insert subdomain of RNA polymerase alpha subunit.	0.998
I0YLS2_COCSC	I0YUU8_COCSC	I0YLS2	I0YUU8	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.998
I0YLS2_COCSC	I0YV46_COCSC	I0YLS2	I0YV46	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	RPA43_OB domain-containing protein.	0.997
I0YLS2_COCSC	I0YXI5_COCSC	I0YLS2	I0YXI5	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase II, 23 kDa polypeptide.	0.998
I0YLS2_COCSC	I0YZ00_COCSC	I0YLS2	I0YZ00	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	RNA polymerase Rpb6.	0.999
I0YLS2_COCSC	I0Z2I5_COCSC	I0YLS2	I0Z2I5	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.996
I0YLS2_COCSC	I0Z8Q6_COCSC	I0YLS2	I0Z8Q6	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
I0YLS2_COCSC	I0ZAH5_COCSC	I0YLS2	I0ZAH5	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	Uncharacterized protein.	0.998
I0YQW0_COCSC	I0YLS2_COCSC	I0YQW0	I0YLS2	RRN3-domain-containing protein.	Uncharacterized protein; Belongs to the eukaryotic RPB8 RNA polymerase subunit family.	0.962
I0YQW0_COCSC	I0YR41_COCSC	I0YQW0	I0YR41	RRN3-domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.994
I0YQW0_COCSC	I0YTG9_COCSC	I0YQW0	I0YTG9	RRN3-domain-containing protein.	Insert subdomain of RNA polymerase alpha subunit.	0.992
I0YQW0_COCSC	I0YUU8_COCSC	I0YQW0	I0YUU8	RRN3-domain-containing protein.	Uncharacterized protein.	0.966
I0YQW0_COCSC	I0YV46_COCSC	I0YQW0	I0YV46	RRN3-domain-containing protein.	RPA43_OB domain-containing protein.	0.995
I0YQW0_COCSC	I0YXI5_COCSC	I0YQW0	I0YXI5	RRN3-domain-containing protein.	DNA-directed RNA polymerase II, 23 kDa polypeptide.	0.975
I0YQW0_COCSC	I0YZ00_COCSC	I0YQW0	I0YZ00	RRN3-domain-containing protein.	RNA polymerase Rpb6.	0.985
I0YQW0_COCSC	I0Z2I5_COCSC	I0YQW0	I0Z2I5	RRN3-domain-containing protein.	Uncharacterized protein.	0.993
I0YQW0_COCSC	I0Z8Q6_COCSC	I0YQW0	I0Z8Q6	RRN3-domain-containing protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.991
I0YQW0_COCSC	I0ZAH5_COCSC	I0YQW0	I0ZAH5	RRN3-domain-containing protein.	Uncharacterized protein.	0.970