STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0Z481_COCSCRRM domain-containing protein. (542 aa)    
Predicted Functional Partners:
I0Z3D9_COCSC
ARM repeat-containing protein.
    
 
 0.965
I0YVM8_COCSC
TPR-like protein.
   
 
 0.935
I0YK10_COCSC
DEAD-domain-containing protein; Belongs to the DEAD box helicase family.
   
 0.919
I0Z049_COCSC
Matrin-type domain-containing protein.
   
 
 0.885
I0YLC5_COCSC
DUF382-domain-containing protein.
   
 
 0.858
I0YVI3_COCSC
Small nuclear ribo protein F.
   
   0.752
I0YZZ3_COCSC
Putative splicing factor 3A subunit 3.
    
 
 0.728
I0YUC8_COCSC
L domain-like protein.
    
 
 0.725
I0YKP3_COCSC
PHF5-like protein.
    
 
 0.720
I0YQT3_COCSC
RNA-binding domain-containing protein.
    
 
 0.706
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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