STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0Z5N4_COCSCPutative ATP-dependent RNA helicase. (701 aa)    
Predicted Functional Partners:
I0YPK8_COCSC
DEAH-box nuclear pre-mRNA splicing factor.
  
  
 
0.906
I0YWF3_COCSC
Sas10 domain-containing protein.
   
  0.790
I0YN99_COCSC
DEAD-domain-containing protein; Belongs to the DEAD box helicase family.
   
 0.782
I0ZA68_COCSC
Nop14-like protein.
 
 
  0.777
I0YPS9_COCSC
DUF1253-domain-containing protein.
   
 0.773
I0YZD5_COCSC
WD_REPEATS_REGION domain-containing protein.
   
 0.773
I0YRB7_COCSC
Slu7 domain-containing protein.
    
 0.766
I0YPR9_COCSC
Gcip-interacting family protein-like protein.
    
 0.752
I0Z864_COCSC
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.752
I0YK91_COCSC
NUC189-domain-containing protein.
   
  0.747
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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