I0Z6C9_COCSC protein (Coccomyxa subellipsoidea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

I0Z6C9_COCSC

Histone deacetylase. (332 aa)

Predicted Functional Partners:

I0YJ45_COCSC

0.763

I0Z9L7_COCSC

0.763

I0Z402_COCSC

0.748

I0YZF3_COCSC

0.676

I0Z3K8_COCSC

0.517

I0YVP9_COCSC

0.494

I0YZY5_COCSC

0.489

I0Z9Q9_COCSC

0.489

I0YU00_COCSC

0.461

I0YRP9_COCSC

0.452

Your Current Organism:

Coccomyxa subellipsoidea

NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
I0YJ45_COCSC	I0YU00_COCSC	I0YJ45	I0YU00	ARID-like protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.840
I0YJ45_COCSC	I0YZF3_COCSC	I0YJ45	I0YZF3	ARID-like protein.	HDAC_interact domain-containing protein.	0.820
I0YJ45_COCSC	I0YZY5_COCSC	I0YJ45	I0YZY5	ARID-like protein.	WD40 repeat-like protein.	0.984
I0YJ45_COCSC	I0Z3K8_COCSC	I0YJ45	I0Z3K8	ARID-like protein.	MRG-domain-containing protein.	0.982
I0YJ45_COCSC	I0Z402_COCSC	I0YJ45	I0Z402	ARID-like protein.	Uncharacterized protein.	0.979
I0YJ45_COCSC	I0Z6C9_COCSC	I0YJ45	I0Z6C9	ARID-like protein.	Histone deacetylase.	0.763
I0YJ45_COCSC	I0Z9L7_COCSC	I0YJ45	I0Z9L7	ARID-like protein.	ARID domain-containing protein.	0.804
I0YJ45_COCSC	I0Z9Q9_COCSC	I0YJ45	I0Z9Q9	ARID-like protein.	Nucleosome remodeling factor.	0.984
I0YRP9_COCSC	I0YVP9_COCSC	I0YRP9	I0YVP9	Cyclic nucleotide-binding domain-containing protein.	WD40 repeat-like protein.	0.677
I0YRP9_COCSC	I0Z6C9_COCSC	I0YRP9	I0Z6C9	Cyclic nucleotide-binding domain-containing protein.	Histone deacetylase.	0.452
I0YU00_COCSC	I0YJ45_COCSC	I0YU00	I0YJ45	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	ARID-like protein.	0.840
I0YU00_COCSC	I0YZF3_COCSC	I0YU00	I0YZF3	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	HDAC_interact domain-containing protein.	0.485
I0YU00_COCSC	I0YZY5_COCSC	I0YU00	I0YZY5	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	WD40 repeat-like protein.	0.855
I0YU00_COCSC	I0Z3K8_COCSC	I0YU00	I0Z3K8	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	MRG-domain-containing protein.	0.660
I0YU00_COCSC	I0Z402_COCSC	I0YU00	I0Z402	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Uncharacterized protein.	0.974
I0YU00_COCSC	I0Z6C9_COCSC	I0YU00	I0Z6C9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Histone deacetylase.	0.461
I0YU00_COCSC	I0Z9L7_COCSC	I0YU00	I0Z9L7	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	ARID domain-containing protein.	0.840
I0YU00_COCSC	I0Z9Q9_COCSC	I0YU00	I0Z9Q9	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	Nucleosome remodeling factor.	0.855
I0YVP9_COCSC	I0YRP9_COCSC	I0YVP9	I0YRP9	WD40 repeat-like protein.	Cyclic nucleotide-binding domain-containing protein.	0.677
I0YVP9_COCSC	I0YZF3_COCSC	I0YVP9	I0YZF3	WD40 repeat-like protein.	HDAC_interact domain-containing protein.	0.685