STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
I0Z808_COCSCUncharacterized protein. (472 aa)    
Predicted Functional Partners:
I0ZAU9_COCSC
RNA-binding domain-containing protein.
   
 0.977
I0Z502_COCSC
Uncharacterized protein.
  
  
 
0.915
I0YP31_COCSC
Uncharacterized protein.
     
  0.900
I0YY19_COCSC
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
     
 
0.900
I0Z4F3_COCSC
RRM domain-containing protein.
   
 0.708
I0YS55_COCSC
Small nuclear ribonucleoprotein Sm D2.
   
 
 0.666
I0Z6U4_COCSC
RNA-binding domain-containing protein.
   
 0.664
I0Z3D9_COCSC
ARM repeat-containing protein.
   
 
 0.652
I0Z5J6_COCSC
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 
 0.649
I0YVI3_COCSC
Small nuclear ribo protein F.
   
 
 0.645
Your Current Organism:
Coccomyxa subellipsoidea
NCBI taxonomy Id: 574566
Other names: C. subellipsoidea C-169, Chlorella vulgaris C-169, Coccomyxa sp. C-169, Coccomyxa subellipsoidea C-169
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.