Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFV20491.1 | SFV21183.1 | SAMN04487966_101405 | SAMN04487966_102226 | PDZ domain-containing protein. | Protein of unknown function. | 0.419 |
SFV20491.1 | SFV21418.1 | SAMN04487966_101405 | SAMN04487966_102346 | PDZ domain-containing protein. | Methyltransferase small domain-containing protein. | 0.450 |
SFV21183.1 | SFV20491.1 | SAMN04487966_102226 | SAMN04487966_101405 | Protein of unknown function. | PDZ domain-containing protein. | 0.419 |
SFV21183.1 | SFV21418.1 | SAMN04487966_102226 | SAMN04487966_102346 | Protein of unknown function. | Methyltransferase small domain-containing protein. | 0.447 |
SFV21183.1 | SFV23298.1 | SAMN04487966_102226 | SAMN04487966_106153 | Protein of unknown function. | Lipopolysaccharide kinase (Kdo/WaaP) family protein. | 0.462 |
SFV21412.1 | SFV21416.1 | SAMN04487966_102343 | SAMN04487966_102345 | ATP-dependent DNA helicase DinG. | Ribosomal protein S18 acetylase RimI. | 0.775 |
SFV21412.1 | SFV21418.1 | SAMN04487966_102343 | SAMN04487966_102346 | ATP-dependent DNA helicase DinG. | Methyltransferase small domain-containing protein. | 0.647 |
SFV21412.1 | hflX | SAMN04487966_102343 | SAMN04487966_102344 | ATP-dependent DNA helicase DinG. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.847 |
SFV21412.1 | rpoB | SAMN04487966_102343 | SAMN04487966_101117 | ATP-dependent DNA helicase DinG. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.963 |
SFV21416.1 | SFV21412.1 | SAMN04487966_102345 | SAMN04487966_102343 | Ribosomal protein S18 acetylase RimI. | ATP-dependent DNA helicase DinG. | 0.775 |
SFV21416.1 | SFV21418.1 | SAMN04487966_102345 | SAMN04487966_102346 | Ribosomal protein S18 acetylase RimI. | Methyltransferase small domain-containing protein. | 0.517 |
SFV21416.1 | hflX | SAMN04487966_102345 | SAMN04487966_102344 | Ribosomal protein S18 acetylase RimI. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.776 |
SFV21418.1 | SFV20491.1 | SAMN04487966_102346 | SAMN04487966_101405 | Methyltransferase small domain-containing protein. | PDZ domain-containing protein. | 0.450 |
SFV21418.1 | SFV21183.1 | SAMN04487966_102346 | SAMN04487966_102226 | Methyltransferase small domain-containing protein. | Protein of unknown function. | 0.447 |
SFV21418.1 | SFV21412.1 | SAMN04487966_102346 | SAMN04487966_102343 | Methyltransferase small domain-containing protein. | ATP-dependent DNA helicase DinG. | 0.647 |
SFV21418.1 | SFV21416.1 | SAMN04487966_102346 | SAMN04487966_102345 | Methyltransferase small domain-containing protein. | Ribosomal protein S18 acetylase RimI. | 0.517 |
SFV21418.1 | SFV23298.1 | SAMN04487966_102346 | SAMN04487966_106153 | Methyltransferase small domain-containing protein. | Lipopolysaccharide kinase (Kdo/WaaP) family protein. | 0.407 |
SFV21418.1 | hflX | SAMN04487966_102346 | SAMN04487966_102344 | Methyltransferase small domain-containing protein. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. | 0.636 |
SFV21418.1 | obg | SAMN04487966_102346 | SAMN04487966_10258 | Methyltransferase small domain-containing protein. | GTP-binding protein; An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. | 0.522 |
SFV21418.1 | rplA | SAMN04487966_102346 | SAMN04487966_101112 | Methyltransferase small domain-containing protein. | LSU ribosomal protein L1P; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.432 |
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