STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV22012.1Hypothetical protein. (181 aa)    
Predicted Functional Partners:
SFV22010.1
Bifunctional non-homologous end joining protein LigD.
 
     0.844
SFV22014.1
Hypothetical protein.
       0.768
SFV22006.1
DNA topoisomerase-1.
 
     0.654
ku
DNA end-binding protein Ku; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family.
 
     0.593
SFV23660.1
Hypothetical protein.
  
     0.488
SFV23254.1
Helicase conserved C-terminal domain-containing protein.
  
     0.464
SFV23424.1
LytR cell envelope-related transcriptional attenuator.
  
     0.438
SFV20270.1
Hypothetical protein.
  
     0.420
SFV23664.1
FHA domain-containing protein.
  
     0.419
SFV22178.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.407
Your Current Organism:
Micrococcus terreus
NCBI taxonomy Id: 574650
Other names: CGMCC 1.7054, JCM 17489, M. terreus, Micrococcus sp. V3M1, Micrococcus terreus Zhang et al. 2010, NBRC 104258, strain V3M1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.