STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV23799.1Putative ABC transport system ATP-binding protein. (223 aa)    
Predicted Functional Partners:
SFV23798.1
Putative ABC transport system permease protein.
 0.988
SFV23098.1
Putative ABC transport system permease protein.
  0.784
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.757
SFV24036.1
ATP-binding cassette, subfamily B.
 
     
0.691
SFV22141.1
FtsX-like permease family protein.
 
  0.683
SFV20018.1
Hypothetical protein.
  
  0.643
SFV24066.1
Putative ABC transport system permease protein.
   
  0.625
SFV22233.1
ATP-binding cassette, subfamily B.
 
    
0.588
rplN
LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
  
     0.567
pheS
phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.557
Your Current Organism:
Micrococcus terreus
NCBI taxonomy Id: 574650
Other names: CGMCC 1.7054, JCM 17489, M. terreus, Micrococcus sp. V3M1, Micrococcus terreus Zhang et al. 2010, NBRC 104258, strain V3M1
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