STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0029Hypothetical protein; KEGG: kse:Ksed_00190 serine/threonine protein kinase; SPTR: Serine/threonine protein kinase. (288 aa)    
Predicted Functional Partners:
Isop_0028
KEGG: psl:Psta_4284 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
Isop_0030
RNA polymerase, sigma-24 subunit, ECF subfamily; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284: IPR007627: IPR013249; KEGG: psl:Psta_4286 RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; SPTR: RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family.
       0.773
Isop_0027
InterPro IPR003343: IPR011444; KEGG: plm:Plim_4094 protein of unknown function DUF1549; PFAM: protein of unknown function DUF1549; Ig domain protein group 2 domain protein; SMART: Ig domain protein group 2 domain protein; SPTR: Putative uncharacterized protein; PFAM: Bacterial Ig-like domain (group 2); Protein of unknown function (DUF1549); Protein of unknown function (DUF1553).
       0.527
Isop_0031
KEGG: tfu:Tfu_2006 hypothetical protein; SPTR: Serine/threonine protein kinase.
       0.447
Isop_0032
Hypothetical protein.
       0.434
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.