STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0050Hypothetical protein; COGs: COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferase of PMT family; KEGG: cyb:CYB_0994 hypothetical protein; SPTR: Putative membrane protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase. (541 aa)    
Predicted Functional Partners:
Isop_2848
KEGG: nha:Nham_2630 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF2029).
  
    0.542
Isop_0844
Hypothetical protein; InterPro IPR001901; KEGG: plm:Plim_0565 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.480
Isop_0051
Protein serine/threonine phosphatase; COGs: COG2208 Serine phosphatase RsbU regulator of sigma subunit; InterPro IPR010822: IPR001932; KEGG: plm:Plim_3158 stage II sporulation E family protein; PFAM: Stage II sporulation protein E; SMART: protein phosphatase 2C domain protein; SPTR: Stage II sporulation E family protein; PFAM: Stage II sporulation protein E (SpoIIE).
       0.440
Isop_2388
KEGG: psl:Psta_2133 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.430
Isop_3545
Pyrrolo-quinoline quinone repeat-containing protein; InterPro IPR002372: IPR019734: IPR018391; KEGG: psl:Psta_2917 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat-containing protein; SPTR: Putative uncharacterized protein.
  
     0.430
Isop_2275
InterPro IPR001623; KEGG: tcu:Tcur_1396 fibronectin type III domain protein; PFAM: heat shock protein DnaJ domain protein; SPTR: Fibronectin type III domain protein.
  
     0.421
Isop_3693
Hypothetical protein; COGs: COG1653 ABC-type sugar transport system periplasmic component; InterPro IPR017985; KEGG: rcp:RCAP_rcc02544 ABC transporter substrate-binding protein; SPTR: ABC transporter, substrate-binding protein; PFAM: Bacterial extracellular solute-binding protein.
  
     0.419
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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