STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
Isop_0074Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR019734: IPR013026: IPR001440; KEGG: ade:Adeh_2822 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide repeat protein; PFAM: Tetratricopeptide repeat. (313 aa)    
Predicted Functional Partners:
Isop_3676
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG0457 FOG: TPR repeat; InterPro IPR019734: IPR013026: IPR001440; KEGG: pcs:Pc22g03720 Pc22g03720; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Pc22g03720 protein; PFAM: Tetratricopeptide repeat.
  
   0.716
Isop_0136
COGs: COG3745 Flp pilus assembly protein CpaB; InterPro IPR017592; KEGG: bbt:BBta_7030 putative pilus assembly protein, CpaB; SPTR: Putative pilus assembly protein, cpaB; TIGRFAM: Flp pilus assembly protein CpaB; TIGRFAM: Flp pilus assembly protein CpaB.
 
  
 0.588
Isop_1702
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG3063 Tfp pilus assembly protein PilF; InterPro IPR019734: IPR013026: IPR001440; KEGG: cyp:PCC8801_1300 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein.
 
    0.584
Isop_0072
Type II and III secretion system protein; COGs: COG4964 Flp pilus assembly protein secretin CpaC; InterPro IPR001775: IPR001814: IPR007055: IPR004846; KEGG: rba:RB13104 type II secretion system protein; PFAM: type II and III secretion system protein; transport-associated; SPTR: Probable type II secretion system protein; PFAM: Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.560
Isop_0879
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG3914 O-linked N-acetylglucosamine transferase SPINDLY family; InterPro IPR001440: IPR019734: IPR013026; KEGG: ote:Oter_3958 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
   0.557
Isop_0958
Hypothetical protein; InterPro IPR019734: IPR013026; KEGG: sus:Acid_3324 TPR repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
  
     0.506
Isop_1533
Tetratricopeptide TPR_1 repeat-containing protein; InterPro IPR019734: IPR013026: IPR001440; KEGG: plm:Plim_2555 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: Tetratricopeptide TPR_2 repeat protein.
 
   0.488
Isop_1160
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG5010 Flp pilus assembly protein TadD contains TPR repeats; InterPro IPR019734: IPR013026: IPR001440; KEGG: azl:AZL_f01560 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SPTR: TPR repeat-containing protein; PFAM: Tetratricopeptide repeat.
 
   0.485
Isop_0261
COGs: COG0515 Serine/threonine protein kinase; InterProIPR019734: IPR000719: IPR013026: IPR017442: IPR 001440: IPR020635: IPR002290; KEGG: mno:Mnod_2431 peptidase C14 caspase catalytic subunit P20; PFAM: Serine/threonine-protein kinase-like domain; Tetratricopeptide TPR_1 repeat-containing protein; SMART: serine/threonine protein kinase; Tyrosine-protein kinase, catalytic domain; Tetratricopeptide repeat; SPTR: TPR domain protein; PFAM: Protein kinase domain; Tetratricopeptide repeat; TIGRFAM: DNA binding domain, excisionase family.
 
   0.445
Isop_2713
Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG4783 Putative Zn-dependent protease contains TPR repeats; InterPro IPR019734: IPR013026: IPR001440; KEGG: met:M446_6666 peptidase C14 caspase catalytic subunit P20; PFAM: Tetratricopeptide TPR_1 repeat-containing protein; SMART: Tetratricopeptide repeat; SPTR: Peptidase C14 caspase catalytic subunit p20; PFAM: Tetratricopeptide repeat.
  
   0.437
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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