STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0078InterPro IPR000866: IPR005123: IPR006620; KEGG: rlg:Rleg_5934 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; 2OG-Fe(II) oxygenase; SMART: Prolyl 4-hydroxylase alpha subunit; SPTR: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; PFAM: AhpC/TSA family. (367 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
   
 
 0.521
Isop_0079
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: plm:Plim_2996 oxidoreductase domain protein; PFAM: oxidoreductase domain protein; SPTR: Oxidoreductase domain protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
       0.454
Isop_2218
4-vinyl reductase 4VR; InterPro IPR004096; KEGG: cyp:PCC8801_1056 4-vinyl reductase 4VR; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR; PFAM: V4R domain.
  
     0.439
Isop_3251
Hemolysin-type calcium-binding region; InterPro IPR018511: IPR018512: IPR001343; KEGG: swp:swp_1383 hemolysin-type calcium-binding region; PFAM: Hemolysin-type calcium-binding region; SPTR: Type I secretion target GGXGXDXXX repeat protein domain protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies).
  
     0.435
Isop_2221
4-vinyl reductase 4VR; COGs: COG1719 hydrocarbon binding protein (contains V4R domain); InterPro IPR004096; KEGG: tel:tll0856 hypothetical protein; PFAM: 4-vinyl reductase 4VR; SPTR: 4-vinyl reductase 4VR; PFAM: V4R domain.
  
     0.417
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.