STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0163Protein of unknown function DUF1573; InterPro IPR011467; KEGG: rba:RB1699 signal peptide; PFAM: protein of unknown function DUF1573; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1573). (396 aa)    
Predicted Functional Partners:
Isop_1649
InterPro IPR007922; KEGG: psl:Psta_1043 protein of unknown function DUF721; PFAM: protein of unknown function DUF721; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF721).
  
     0.670
Isop_0409
Prenyltransferase/squalene oxidase; InterPro IPR001330; KEGG: plm:Plim_0306 A-macroglobulin complement component; PFAM: Prenyltransferase/squalene oxidase; SPTR: A-macroglobulin complement component.
  
     0.664
Isop_1364
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: rba:RB12167 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein.
  
     0.620
Isop_0849
KEGG: psl:Psta_2453 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.610
Isop_0018
KEGG: plm:Plim_0750 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.608
Isop_1965
Hypothetical protein; KEGG: psl:Psta_3038 peptidase-like protein; SPTR: Peptidase-like protein.
  
     0.605
Isop_3179
Hypothetical protein; KEGG: rba:RB850 signal peptide; SPTR: Putative uncharacterized protein.
  
     0.591
Isop_3658
InterPro IPR001434; KEGG: psl:Psta_4233 conserved repeat domain protein; SPTR: Putative uncharacterized protein; TIGRFAM: conserved repeat domain protein; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain.
  
     0.586
Isop_0986
KEGG: psl:Psta_0111 organic solvent tolerance protein OstA-like protein; SPTR: Organic solvent tolerance protein OstA-like protein.
  
     0.570
Isop_3405
KEGG: rba:RB10483 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF3467).
  
     0.563
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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