STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0176Ureidoglycolate lyase; COGs: COG0179 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1 7-dioic acid hydratase (catechol pathway); InterPro IPR002529; KEGG: rme:Rmet_5199 fumarylacetoacetate hydrolase; PFAM: fumarylacetoacetate (FAA) hydrolase; PRIAM: Ureidoglycolate lyase; SPTR: 5-carboxymethyl-2-hydroxymuconate delta-isomerase; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (322 aa)    
Predicted Functional Partners:
Isop_2260
COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: scl:sce8243 fumarylacetoacetase family protein; PFAM: fumarylacetoacetate (FAA) hydrolase; SPTR: Fumarylacetoacetase family protein; PFAM: Fumarylacetoacetate (FAA) hydrolase family.
 
     0.679
Isop_0174
Hypothetical protein; KEGG: clj:CLJU_c05530 putative polysaccharide biosynthesis protein; SPTR: Membrane protein involved in the export of O-antigen and teichoic acid.
       0.605
Isop_0175
Glycosyl transferase family 39; InterPro IPR003342; KEGG: psl:Psta_0545 hypothetical protein; PFAM: glycosyl transferase family 39; SPTR: Dolichyl-phosphate-mannose-protein mannosyltransferase protein; PFAM: Dolichyl-phosphate-mannose-protein mannosyltransferase.
       0.605
Isop_0173
Methyltransferase type 11; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR004838: IPR013216; KEGG: bcv:Bcav_2198 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11; PFAM: Methyltransferase domain.
       0.575
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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