STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Isop_0202KEGG: plm:Plim_3249 hypothetical protein; SPTR: Putative uncharacterized protein. (596 aa)    
Predicted Functional Partners:
Isop_0849
KEGG: psl:Psta_2453 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.774
Isop_0967
Hypothetical protein; KEGG: rba:RB6127 signal peptide; SPTR: Putative uncharacterized protein.
  
    0.774
Isop_0986
KEGG: psl:Psta_0111 organic solvent tolerance protein OstA-like protein; SPTR: Organic solvent tolerance protein OstA-like protein.
  
     0.774
Isop_1364
Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307; KEGG: rba:RB12167 hypothetical protein; PFAM: Xylose isomerase domain-containing protein TIM barrel; SPTR: Putative uncharacterized protein.
  
     0.774
Isop_2545
KEGG: psl:Psta_4479 protein of unknown function DUF1559; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.774
Isop_3110
KEGG: plm:Plim_0161 protein of unknown function DUF1559; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.774
Isop_0018
KEGG: plm:Plim_0750 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.773
Isop_0715
KEGG: rba:RB8980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.773
Isop_0716
KEGG: rba:RB8980 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Protein of unknown function (DUF1559).
  
     0.773
Isop_1535
KEGG: psl:Psta_4659 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.773
Your Current Organism:
Isosphaera pallida
NCBI taxonomy Id: 575540
Other names: I. pallida ATCC 43644, Isosphaera pallida ATCC 43644, Isosphaera pallida DSM 9630, Isosphaera pallida IS1B, Isosphaera pallida str. ATCC 43644, Isosphaera pallida strain ATCC 43644
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.